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SRX16037445: GSM6294407: KOD1-WT-sample-experiment-1; Thermococcus kodakarensis; ncRNA-Seq
1 ABI_SOLID (AB SOLiD 4 System) run: 70.1M spots, 2.4G bases, 705Mb downloads

External Id: GSM6294407_r1
Submitted by: University of Tsukuba
Study: Genetic and functional analyses of archaeal ATP-dependent RNA Ligase
show Abstracthide Abstract
In this study, we generated allelic knockouts of ATP-dependent RNA ligase (Rnl) in hyperthermophilic archaeon T. kodakarensis and analyze the small RNAs. Overall design: T. kodakarensis gene encoding for RNA ligase TK1545 was knock-out by homologous recombination, and the RNA samples were analyzed by RNA seq. The differentially expressed circular RNAs between the two strains were analyzed.
Sample: KOD1-WT-sample-experiment-1
SAMN29532028 • SRS13717281 • All experiments • All runs
Library:
Name: GSM6294407
Instrument: AB SOLiD 4 System
Strategy: ncRNA-Seq
Source: TRANSCRIPTOMIC
Selection: size fractionation
Layout: SINGLE
Construction protocol: Total RNA was isolated from T. kodakarensisand and from tk1545 knock-out strain using TRIZOL reagent (Invitrogen). Small RNA libraries NEBNext® Small RNA Library Prep Set for SOLiD™ Collected RNAs were subject to adaptor ligation, revere transcribed, and PCR amplified. The amplified cDNA library was size selected (100 - 150 nts) by gel purification.
Runs: 1 run, 70.1M spots, 2.4G bases, 705Mb
Run# of Spots# of BasesSizePublished
SRR1999639870,126,8372.4G705Mb2022-08-02

ID:
22715911

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